BASIL Biochemistry Curriculum: Publications

BASIL

  1. Sikora A, Irby SM, Hall BL, Mills SA, Koeppe JR, Pikaart MJ, Wilner SE, Craig PA, Roberts, R. Responses to the COVID-19 Pandemic by the Biochemistry Authentic Scientific Inquiry Lab (BASIL) CURE Consortium: Reflections and a Case Study on the Switch to Remote Learning. Journal of Chemical Education (2020)
  2. Burley SK, Bromberg Y, Craig P, Duffy S, Dutta S, Hall BL, Hudson BP, Jiang J, Khare SD, Koeppe JR, Lubin JH, Mills SA, Pikaart MJ, Roberts R, Sarma V, Singh J, Tischfield JA, Xie L, Zardecki C. Virtual Book Camp: COVID-19 evolution and structural biology. Biochemistry and Molecular Biology Education (2020)
  3. Craig PA. Something old, something new: Teaching the BMB lab. Biochemistry and Molecular Biology Education (2020)
  4. Craig PA. Publishing your educational research. Biochemistry and Molecular Biology Education (2020)
  5. Craig PA. Developing and applying computational resources for biochemistry education. Biochemistry and Molecular Biology Education (2020)
  6. Irby SM, Pelaez NJ, Anderson TR. Student Perceptions of Their Gains in Course-Based Undergraduate Research Abilities Identified as the Anticipated Learning Outcomes for a Biochemistry CURE. Journal of Chemical Education, 97(1), 55–65 (2020)
  7. Roberts R, Hall B, Daubner C, Goodman A, Pikaart M, Sikora A, Craig P. Flexible Implementation of the BASIL CURE, Biochemistry and Molecular Biology Education 47:498-505 (2019)
  8. Irby, SM, Pelaez, NJ, Anderson, TR. Anticipated Learning Outcomes for a Biochemistry Course-based Undergraduate Research Experience Aimed at Predicting Protein Function from Structure: Implications for Assessment Design. Biochemistry and Molecular Biology Education, 46(5), 478–492 (2018)
  9. Irby SM, Pelaez NJ, Anderson TR. How to Identify the Research Abilities That Instructors Anticipate Students Will Develop in a Biochemistry Course-Based Undergraduate Research Experience (CURE). CBE Life Sciences Education 17:es4, 1-14 (2018).
  10. Craig PA, Anderson T, Bernstein HJ, Daubner C, Goodman A, Irby SM, Koeppe J, Mills JL, Pikaart M, Ringer McDonald A‡, O’Handley SF, Roberts R, and Stewart R. Using Protein Function Prediction to Promote Hypothesis-Driven Thinking in Undergraduate Biochemistry Education. The Chemist 91:1-8 (2018).
  11. Craig, PA. Lessons from my undergraduate research students. Journal of Biological Chemistry, 293, 10447-10452 (2018), DOI: 10.1074/jbc.RA118.003722.
  12. Craig, PA. A survey on faculty perspectives on the transition to a biochemistry course‐based undergraduate research experience laboratory. Biochemistry and Molecular Biology Education 45, 426-436 (2017) DOI: 10.1002/bmb.21060.

ProMOL

  1. Osipovitch M, Lambrecht M, Baker C, Madha S, Mills JL, Craig PA, Bernstein HJ. Automated protein motif generation in the structure-based protein function prediction tool ProMOL, Journal of Structural and Functional Genomics 16:101-11 (2015) DOI: 10.1007/s10969-015-9199-0; PubMed PMID: 26573864. In process at NIHMS. NIHMS ID: NIHMS738909.
  2. McKay T, Hart K, Horn A, Kessler H, Dodge G, Bardhi K, Bardhi K, Mills JL, Bernstein, HJ, Craig PA. Annotation of Proteins of Unknown Function: Initial Enzyme Results, Journal of Structural and Functional Genomics 16:43-54 (2015) DOI: 10.1007/s10969-015-9194-5; PubMed PMID: 25630330; PubMed Central PMCID: PMC4332402.
  3. Hanson B, Westin C, Rosa M, Grier A, Osipovitch M, MacDonald ML, Dodge G, Boli, PM, Corwin CW, Kessler H, McKay T, Bernstein HJ, Craig PA. Estimation of Protein Function Using Template-Based Alignment of Enzyme Active Sites. BMC Bioinformatics, 15:87 (2014), DOI:10.1186/1471-2105-15-87; PubMed PMID: 24669788; PubMed Central PMCID: PMC4229977.
  4. Grell L, Parkin C, Craig PA, Slatest L. EZ-Viz – A Tool for Simplifying Molecular Viewing in PyMOL, Biochemistry and Molecular Biology Education 34:402-407 (2006) DOI: 10.1002/bmb.2006.494034062672.